Use ProteinEBM Scoring

Official Neurosnap webserver for accessing ProteinEBM Scoring online.

Overview

ProteinEBM Scoring applies the ProteinEBM-x expert checkpoint to evaluate protein structures with a learned energy function. Choose a scoring mode to score a single structure, rank decoys, compare conformations, or screen point mutations on a fixed backbone.

Neurosnap Overview

The ProteinEBM Scoring online webserver allows anybody with a Neurosnap account to run and access ProteinEBM Scoring, no downloads required. Information submitted through this webserver is kept confidential and never sold to third parties as detailed by our strong Terms of Use and Privacy Policy.

Features

  • Scores individual protein structures with ProteinEBM learned energy.
  • Ranks structural decoys by predicted energy to prioritize native-like models.
  • Compares alternative conformations and reports delta energies relative to the lowest-energy structure.
  • Screens point mutations on a fixed backbone with wild-type, mutant, and delta energy reporting.
  • Supports template self-conditioning and adjustable scoring noise for structure evaluation.

Statistics

Neurosnap periodically calculates runtime statistics based on job execution data. These estimates provide a general guideline for how long your job may take, but actual runtimes can vary significantly depending on factors like input size or settings used.

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API Request

Access ProteinEBM Scoring using the Neurosnap API by sending a request using any programming language with HTTP support. To safely generate an API key, visit the API tab of your overview page.

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Job Note

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Inputs & Configuration

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