ProteinEBM Scoring
Score, rank, and compare protein structures with ProteinEBM energy.
Overview
ProteinEBM Scoring applies the ProteinEBM-x expert checkpoint to evaluate protein structures with a learned energy function. Choose a scoring mode to score a single structure, rank decoys, compare conformations, or screen point mutations on a fixed backbone.
Run ProteinEBM Scoring on Neurosnap
The ProteinEBM Scoring online webserver allows anybody with a Neurosnap account to run and access ProteinEBM Scoring, no downloads required. Information submitted through this webserver is kept confidential and never sold to third parties as detailed by our strong Terms of Use and Privacy Policy.
Features
- Scores individual protein structures with ProteinEBM learned energy.
- Ranks structural decoys by predicted energy to prioritize native-like models.
- Compares alternative conformations and reports delta energies relative to the lowest-energy structure.
- Screens point mutations on a fixed backbone with wild-type, mutant, and delta energy reporting.
- Supports template self-conditioning and adjustable scoring noise for structure evaluation.
Statistics
Neurosnap periodically calculates runtime statistics based on job execution data. These estimates provide a general guideline for how long your job may take, but actual runtimes can vary significantly depending on factors like input size or settings used.
| Statistic | Value |
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| Credit Usage Rate | loading... |
| Estimated Total Cost | loading... |
| Runtime Mean | loading... |
| Runtime Median | loading... |
| Runtime Standard Deviation | loading... |
| Runtime 90th Percentile | loading... |
| Runtime Longest | loading... |
API Request
Access ProteinEBM Scoring using the Neurosnap API by sending a request using any programming language with HTTP support. To safely generate an API key, visit the API tab of your overview page.
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Citations
Please cite the original work when using ProteinEBM Scoring in publications or research outputs.
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Roney J, et al. ProteinEBM: Energy Based Models for Protein Structure Generation and Evaluation. bioRxiv 2025. |
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Neurosnap Inc. (2022). Neurosnap: An online platform for computational biology and chemistry. Available at: https://neurosnap.ai/ |