Pipelines

Design a custom workflow by selecting and linking Neurosnap tools.

Neurosnap pipelines are ideal for linear workflows where you want to route inputs & outputs from various tools to one-another as well as bulk & batch workflows.

For more complex workflows we recommend using our API paired with jupyter notebooks.

Pipeline Errors
Node Error Message

Estimated total credit cost for running this pipeline is 0 credits. Estimates are not guaranteed & runtime can vary depending on inputs and settings.

To run a pipeline, please login or register an account.

Uploaded pipelines cannot be edited afterwards. Ensure that all files are correctly uploaded and that nodes are configured to your liking.

Node ID Node Type Size

Add Pipeline Nodes

Export Template

The following template code can be copied and saved to produce the same pipeline you are using. Upload files and protein data are not included in the template codes. Template codes can be shared and used by anyone with the code.

Template Code:

Import Template

Enter a pipeline template code to import and use it.

Pre-made Pipeline Templates

Select a pre-made Neurosnap Pipeline from our list of free templates.

Pipeline Information & Instructions

Neurosnap pipelines may seem daunting at first but offer a powerful way to propagate information between various tools on Neurosnap without any programming or technical expertise. With that said there are a number of common pitfalls that users can run into while setting up a pipeline and the following details are provided to help minimize mistakes.


Overview

Instructions

  1. Create the basics for your pipeline by either importing an existing pipeline using a template by clicking the
    button or by adding nodes directly using the
    button.
  2. All valid pipelines must including at least one input node and service node.
  3. Input nodes can only be connected to service nodes of the corresponding type. For instance, GROMACS receives an input protein structure as its input and therefore must be connected to a Protein Structure List node.
  4. Additional routing of resulting files can be done using a Job File Select node which can only be connected to service nodes.
  5. Make sure to review the total credit cost prior to submission as well as the connections between nodes!

TIP: We recommend exploring some of our pre-made pipelines so that you can see some existing best practices for pipeline creation.


Video Tutorial