PSSM Sequence Scan
Find and rank ungapped profile-length windows in longer protein sequences. Scores are log-odds in bits, with no calibrated E-values or PSI-BLAST equivalence.
Overview
Find and rank ungapped profile-length windows in longer protein sequences. Scores are log-odds in bits, with no calibrated E-values or PSI-BLAST equivalence.
Run PSSM Sequence Scan on Neurosnap
The PSSM Sequence Scan online webserver allows anybody with a Neurosnap account to run and access PSSM Sequence Scan, no downloads required. Information submitted through this webserver is kept confidential and never sold to third parties as detailed by our strong Terms of Use and Privacy Policy.
Features
- Score ungapped windows in up to 100 protein sequences.
- Rank windows by profile score with one-based inclusive start/end positions.
- Report too-short sequences and threshold-filtered empty results.
- Download matching windows and per-sequence summaries as CSV.
Statistics
Neurosnap periodically calculates runtime statistics based on job execution data. These estimates provide a general guideline for how long your job may take, but actual runtimes can vary significantly depending on factors like input size or settings used.
| Statistic | Value |
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| Credit Usage Rate | loading... |
| Estimated Total Cost | loading... |
| Runtime Mean | loading... |
| Runtime Median | loading... |
| Runtime Standard Deviation | loading... |
| Runtime 90th Percentile | loading... |
| Runtime Longest | loading... |
API Request
Access PSSM Sequence Scan using the Neurosnap API by sending a request using any programming language with HTTP support. To safely generate an API key, visit the API tab of your overview page.
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Citations
Please cite the original work when using PSSM Sequence Scan in publications or research outputs.
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Amani, Keaun, and Danial Gharaie Amirabadi. 2024. Neurosnap SDK Package. Software. https://github.com/NeurosnapInc/neurosnap. |
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Neurosnap Inc. (2022). Neurosnap: An online platform for computational biology and chemistry. Available at: https://neurosnap.ai/ |