PSSM Generation
Build a reusable protein profile from an existing MSA or generate an alignment from sequences or a query.
Overview
Build a reusable protein profile from an existing MSA or generate an alignment from sequences or a query.
Run PSSM Generation on Neurosnap
The PSSM Generation online webserver allows anybody with a Neurosnap account to run and access PSSM Generation, no downloads required. Information submitted through this webserver is kept confidential and never sold to third parties as detailed by our strong Terms of Use and Privacy Policy.
Features
- One generation flow for uploaded MSAs and MAFFT/MMseqs2 alignment generation.
- Full-precision, versioned profile JSON with probabilities, background, weights, coordinates and generation settings.
- PSSM heatmap, consensus, gap fraction, coverage, conservation and support flags.
- Reuse the profile for batch alignment, scanning and profile comparison.
Statistics
Neurosnap periodically calculates runtime statistics based on job execution data. These estimates provide a general guideline for how long your job may take, but actual runtimes can vary significantly depending on factors like input size or settings used.
| Statistic | Value |
|---|---|
| Credit Usage Rate | loading... |
| Estimated Total Cost | loading... |
| Runtime Mean | loading... |
| Runtime Median | loading... |
| Runtime Standard Deviation | loading... |
| Runtime 90th Percentile | loading... |
| Runtime Longest | loading... |
API Request
Access PSSM Generation using the Neurosnap API by sending a request using any programming language with HTTP support. To safely generate an API key, visit the API tab of your overview page.
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Citations
Please cite the original work when using PSSM Generation in publications or research outputs.
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Amani, Keaun, and Danial Gharaie Amirabadi. 2024. Neurosnap SDK Package. Software. https://github.com/NeurosnapInc/neurosnap. |
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Neurosnap Inc. (2022). Neurosnap: An online platform for computational biology and chemistry. Available at: https://neurosnap.ai/ |