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Molecule Model Inference

Predict molecular properties with your trained KERMT model.

Overview

Apply a completed KERMT training job to new molecules. Supply its training job ID and a CSV containing ID and SMILES; measured targets are not required. Predictions inherit the training model's target names and units.

Run Molecule Model Inference on Neurosnap

The Molecule Model Inference online webserver allows anybody with a Neurosnap account to run and access Molecule Model Inference, no downloads required. Information submitted through this webserver is kept confidential and never sold to third parties as detailed by our strong Terms of Use and Privacy Policy.

Molecule Model Inference service preview

Features

  • Uses the pretrained KERMT v2 molecular graph encoder.
  • Supports multiple regression targets or multiple binary classification targets, with missing measurements.
  • Reuses target scaling and molecular graph processing for downstream inference.

Statistics

Neurosnap periodically calculates runtime statistics based on job execution data. These estimates provide a general guideline for how long your job may take, but actual runtimes can vary significantly depending on factors like input size or settings used.

Statistic Value
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API Request

Access Molecule Model Inference using the Neurosnap API by sending a request using any programming language with HTTP support. To safely generate an API key, visit the API tab of your overview page.

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Citations

Please cite the original work when using Molecule Model Inference in publications or research outputs.

Multitask finetuning and acceleration of chemical pretrained models for small molecule drug property prediction. https://arxiv.org/abs/2510.12719

Contrastive KERMT. https://arxiv.org/abs/2606.11508

Neurosnap Inc. (2022). Neurosnap: An online platform for computational biology and chemistry. Available at: https://neurosnap.ai/

Set up your run

Configure Molecule Model Inference

Choose your inputs and settings, then review the estimated credits before submitting.

Use a note to recognize this job later. It does not affect the results.

Inputs & configuration

Loading inputs and options... validating knobs, tuning dials, and staging your experiment.

Ready to submit your job?

Review your configuration, then confirm the estimated credit cost before you run the job.

Note that credit estimates are not guaranteed and runtime can vary depending on inputs and settings.

Estimated Credits: calculating...

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