AlphaFind
Fast structure similarity search across AlphaFold DB.
Overview
AlphaFind provides fast, structure-based retrieval across AlphaFold DB by embedding whole protein folds and ranking globally similar structures with similarity metrics.
Run AlphaFind on Neurosnap
The AlphaFind online webserver allows anybody with a Neurosnap account to run and access AlphaFind, no downloads required. Information submitted through this webserver is kept confidential and never sold to third parties as detailed by our strong Terms of Use and Privacy Policy.
Features
- Trained from scratch by the Neurosnap team and does not make any external API requests.
- Searches AlphaFold DB by global 3D structure similarity.
- Uses compact embeddings for scalable retrieval.
- Returns ranked neighbors with similarity metrics.
- Supports inspection via structural superpositions.
Statistics
Neurosnap periodically calculates runtime statistics based on job execution data. These estimates provide a general guideline for how long your job may take, but actual runtimes can vary significantly depending on factors like input size or settings used.
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API Request
Access AlphaFind using the Neurosnap API by sending a request using any programming language with HTTP support. To safely generate an API key, visit the API tab of your overview page.
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Citations
Please cite the original work when using AlphaFind in publications or research outputs.
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Procházka D, Slanináková T, Olha J, Rošinec A, Grešová K, Jánošová M, Čillík J, Porubská J, Svobodová R, Dohnal V, Antol M. AlphaFind: discover structure similarity across the proteome in AlphaFold DB. Nucleic Acids Res. 2024 Jul 5;52(W1):W182-W186. doi: 10.1093/nar/gkae397. PMID: 38747341; PMCID: PMC11223785. |
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Neurosnap Inc. (2022). Neurosnap: An online platform for computational biology and chemistry. Available at: https://neurosnap.ai/ |