Use Align Structures

Features

• Uses the first uploaded structure as the fixed reference for every alignment.
• Supports single-model PDB, CIF, and mmCIF files without converting their output format.
• Fits corresponding protein and nucleotide backbone atoms with a Kabsch superposition.
• Optionally restricts the fit to an ordered comma-delimited list of chain IDs.
• Preserves and transforms the complete structure, including ligands, ions, waters, and other non-polymer atoms.
• Reports the post-alignment backbone RMSD for each output structure.

Statistics

Neurosnap periodically calculates runtime statistics based on job execution data. These estimates provide a general guideline for how long your job may take, but actual runtimes can vary significantly depending on factors like input size or settings used.