Use RMSD Calculator
Official Neurosnap webserver for accessing RMSD Calculator online.
Overview
Calculate backbone root-mean-square deviation for every pair of structures across a reference group and a mobile group using the Neurosnap SDK. Structures can be superimposed before measurement or compared directly in their submitted coordinate frames.
Neurosnap Overview
The RMSD Calculator online webserver allows anybody with a Neurosnap account to run and access RMSD Calculator, no downloads required. Information submitted through this webserver is kept confidential and never sold to third parties as detailed by our strong Terms of Use and Privacy Policy.
Features
- Calculates every reference-mobile comparison across two uploaded structure groups.
- Supports single-model PDB, CIF, and mmCIF protein and nucleotide structures.
- Optionally superimposes corresponding backbone atoms before calculating RMSD.
- Supports direct coordinate-frame RMSD calculations when superposition is disabled.
- Returns a compact CSV table with filenames and three-decimal backbone RMSD values.
Statistics
Neurosnap periodically calculates runtime statistics based on job execution data. These estimates provide a general guideline for how long your job may take, but actual runtimes can vary significantly depending on factors like input size or settings used.
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API Request
Access RMSD Calculator using the Neurosnap API by sending a request using any programming language with HTTP support. To safely generate an API key, visit the API tab of your overview page.
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Citations
Please cite the original work when using RMSD Calculator in publications or research outputs.
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Amani, Keaun, and Danial Gharaie Amirabadi. 2024. Neurosnap SDK Package. Software. https://github.com/NeurosnapInc/neurosnap. |
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Neurosnap Inc. (2022). Neurosnap: An online platform for computational biology and chemistry. Available at: https://neurosnap.ai/ |
Job Note
Provide a name or description for your job to help you organize and track its results. This input is solely for organizational purposes and does not impact the outcome of the job.
Inputs & Configuration
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Review your configuration, then confirm the estimated credit cost before you run the job.
Note that credit estimates are not guaranteed and runtime can vary depending on inputs and settings.
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