PSSM Sequence Alignment
Align and rank protein candidates against one reusable position-specific protein profile. Scores are log-odds in bits, with no calibrated E-values or PSI-BLAST equivalence.
Overview
Align and rank protein candidates against one reusable position-specific protein profile. Scores are log-odds in bits, with no calibrated E-values or PSI-BLAST equivalence.
Run PSSM Sequence Alignment on Neurosnap
The PSSM Sequence Alignment online webserver allows anybody with a Neurosnap account to run and access PSSM Sequence Alignment, no downloads required. Information submitted through this webserver is kept confidential and never sold to third parties as detailed by our strong Terms of Use and Privacy Policy.
Features
- Batch local or global affine-gap alignment for up to 100 candidates.
- Ranked profile scores in bits with gapped alignment strings.
- Map profile positions to original MSA columns and query residues.
- Inspect per-residue scores and sequence positions in an alignment viewer.
Statistics
Neurosnap periodically calculates runtime statistics based on job execution data. These estimates provide a general guideline for how long your job may take, but actual runtimes can vary significantly depending on factors like input size or settings used.
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| Runtime Standard Deviation | loading... |
| Runtime 90th Percentile | loading... |
| Runtime Longest | loading... |
API Request
Access PSSM Sequence Alignment using the Neurosnap API by sending a request using any programming language with HTTP support. To safely generate an API key, visit the API tab of your overview page.
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Citations
Please cite the original work when using PSSM Sequence Alignment in publications or research outputs.
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Amani, Keaun, and Danial Gharaie Amirabadi. 2024. Neurosnap SDK Package. Software. https://github.com/NeurosnapInc/neurosnap. |
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Neurosnap Inc. (2022). Neurosnap: An online platform for computational biology and chemistry. Available at: https://neurosnap.ai/ |