How to Use RNAplfold | ViennaRNA

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Try RNAplfold | ViennaRNA View Paper
RNA Structure & Design Utilities & Conversions RNA Secondary Structure Thermodynamics

Estimate local RNA accessibility and base-pair probabilities along a sequence.

Estimate local RNA accessibility and base-pair probabilities along a sequence. Upload or paste the appropriate RNA input, adjust the advanced settings if needed, and inspect the returned table and available visualizations.

How RNAplfold | ViennaRNA Works

Local partition functions estimate the chance that each RNA segment remains unpaired within a sliding window. The output table reports accessibility by position and segment length, and a base-pair probability map when available. Window and span settings determine which local structures are considered.

What is Neurosnap?

Neurosnap is the leading platform for bioinformatics and computational science focused on expanding access to powerful modeling and simulation tools. Because many state-of-the-art machine learning systems remain complex to install, configure, and scale, Neurosnap offers a clean, browser-based workspace that removes the burden of infrastructure management, dependency conflicts, and command-line tooling.

Built for biologists, chemists, and cross-disciplinary scientists, the platform enables advanced computational workflows without requiring expertise in software engineering or cloud architecture. Researchers can launch analyses through an intuitive interface, connect programmatically through a comprehensive API, and rely on automated resource management to scale workloads efficiently. By taking care of the underlying compute and operational complexity, Neurosnap allows teams to devote their energy to scientific progress and faster iteration. Security and data protection remain foundational principles, with clear safeguards outlined in our Terms of Use and Privacy Policy to ensure your work stays protected.

Advancing Discovery with RNAplfold | ViennaRNA on Neurosnap

Using RNAplfold | ViennaRNA on Neurosnap could drastically accelerate RNA structure and interaction analysis from sequence data.

  • Focused inputs: Submit RNA sequence or structure data directly.
  • Traceable output: Review a result table and the original calculation output.
  • Visual review: Inspect a secondary-structure arc diagram when a structure is returned.

How to Use RNAplfold | ViennaRNA on Neurosnap

To harness the capabilities of RNAplfold | ViennaRNA, researchers can follow this streamlined workflow within Neurosnap:

  1. Access Neurosnap: Start by logging in to the Neurosnap website.
  2. Select Tool: From the list of available tools, choose RNAplfold | ViennaRNA.
  3. Provide Inputs: Provide all the inputs specified within the submission panel and optionally configure the tool as desired.
  4. Run Tool: Submit the RNAplfold | ViennaRNA job and Neurosnap will execute it in the cloud, automatically notifying you as soon as your results are ready.
  5. Review Output: Explore your results through rich visualizations, including figures, plots, and interactive views designed to help you analyze findings with clarity and confidence.

Citations

Please cite the original work when using RNAplfold | ViennaRNA in publications or research outputs.

Lorenz et al. 2011. ViennaRNA Package 2.0. Algorithms for Molecular Biology 6:26. https://doi.org/10.1186/1748-7188-6-26.

Neurosnap Inc. (2022). Neurosnap: An online platform for computational biology and chemistry. Available at: https://neurosnap.ai/

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