LightDock
Powerful molecular docking algorithm for proteins and nucleotides.
Overview
LightDock is a protein-protein, protein-peptide and protein-DNA docking framework based on the Glowworm Swarm Optimization (GSO) algorithm.
Run LightDock on Neurosnap
The LightDock online webserver allows anybody with a Neurosnap account to run and access LightDock, no downloads required. Information submitted through this webserver is kept confidential and never sold to third parties as detailed by our strong Terms of Use and Privacy Policy.
Features
- Allows you to dock proteins with peptides, DNA, and other proteins.
- Options for rigid and flexible backbone.
- Supports different sampling techniques to better explore the energy landscape.
Statistics
Neurosnap periodically calculates runtime statistics based on job execution data. These estimates provide a general guideline for how long your job may take, but actual runtimes can vary significantly depending on factors like input size or settings used.
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API Request
Access LightDock using the Neurosnap API by sending a request using any programming language with HTTP support. To safely generate an API key, visit the API tab of your overview page.
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Citations
Please cite the original work when using LightDock in publications or research outputs.
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LightDock: a new multi-scale approach to protein–protein docking Brian Jiménez-García, Jorge Roel-Touris, Miguel Romero-Durana, Miquel Vidal, Daniel Jiménez-González and Juan Fernández-Recio Bioinformatics, Volume 34, Issue 1, 1 January 2018, Pages 49–55, https://doi.org/10.1093/bioinformatics/btx555 |
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LightDock goes information-driven Jorge Roel-Touris, Alexandre M.J.J. Bonvin, Brian Jiménez-García Bioinformatics, btz642; doi: https://doi.org/10.1093/bioinformatics/btz642 |
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Integrative Modeling of Membrane-associated Protein Assemblies Jorge Roel-Touris, Brian Jiménez-García & Alexandre M.J.J. Bonvin Nat Commun 11, 6210 (2020); doi: https://doi.org/10.1038/s41467-020-20076-5 |
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Neurosnap Inc. (2022). Neurosnap: An online platform for computational biology and chemistry. Available at: https://neurosnap.ai/ |