Use LightDock

Official Neurosnap webserver for accessing LightDock online.

Molecular Docking Drug Design

Overview

LightDock is a protein-protein, protein-peptide and protein-DNA docking framework based on the Glowworm Swarm Optimization (GSO) algorithm.

Neurosnap Overview

The LightDock online webserver allows anybody with a Neurosnap account to run and access LightDock, no downloads required. Information submitted through this webserver is kept confidential and never sold to third parties as detailed by our strong terms of service and privacy policy.

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Features

  • Allows you to dock proteins with peptides, DNA, and other proteins.
  • Options for rigid and flexible backbone.
  • Supports different sampling techniques to better explore the energy landscape.

Statistics

Neurosnap periodically calculates runtime statistics based on job execution data. These estimates provide a general guideline for how long your job may take, but actual runtimes can vary significantly depending on factors like input size or settings used.

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API Request

Access LightDock using the Neurosnap API by sending a request using any programming language with HTTP support. To safely generate an API key, visit the API tab of your overview page.

Job Note

Provide a name or description for your job to help you organize and track its results. This input is solely for organizational purposes and does not impact the outcome of the job.

Configuration & Options

Service Inputs

The protein structure to use as the receptor. Should not include DNA, RNA, or anything else. Note that lightdock is currently unable to handle proteins larger than 1000 residues.

The protein, RNA, or DNA structure to use as the ligand.

Select the type of docking you want to perform.

Advanced Settings

The number of simulation steps (recommended 100-200). Higher values will result in greater prediction quality but longer run times.

Enables the flexible backbone option for the receptor and ligand structures. Make sure there are no residues with missing backbone atoms if you enable this.

Ready to submit your job?

Once you're done just hit the submit button below and let us do the rest.

To submit a job please login or register an account.