Use LightDock
Official Neurosnap webserver for accessing LightDock online.
Overview
LightDock is a protein-protein, protein-peptide and protein-DNA docking framework based on the Glowworm Swarm Optimization (GSO) algorithm.
Neurosnap Overview
The LightDock online webserver allows anybody with a Neurosnap account to run and access LightDock, no downloads required. Information submitted through this webserver is kept confidential and never sold to third parties as detailed by our strong Terms of Use and Privacy Policy.
Features
- Allows you to dock proteins with peptides, DNA, and other proteins.
- Options for rigid and flexible backbone.
- Supports different sampling techniques to better explore the energy landscape.
Statistics
Neurosnap periodically calculates runtime statistics based on job execution data. These estimates provide a general guideline for how long your job may take, but actual runtimes can vary significantly depending on factors like input size or settings used.
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| Runtime Mean | loading... |
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| Runtime Standard Deviation | loading... |
| Runtime 90th Percentile | loading... |
| Runtime Longest | loading... |
API Request
Access LightDock using the Neurosnap API by sending a request using any programming language with HTTP support. To safely generate an API key, visit the API tab of your overview page.
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Citations
Please cite the original work when using LightDock in publications or research outputs.
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LightDock: a new multi-scale approach to protein–protein docking Brian Jiménez-García, Jorge Roel-Touris, Miguel Romero-Durana, Miquel Vidal, Daniel Jiménez-González and Juan Fernández-Recio Bioinformatics, Volume 34, Issue 1, 1 January 2018, Pages 49–55, https://doi.org/10.1093/bioinformatics/btx555 |
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LightDock goes information-driven Jorge Roel-Touris, Alexandre M.J.J. Bonvin, Brian Jiménez-García Bioinformatics, btz642; doi: https://doi.org/10.1093/bioinformatics/btz642 |
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Integrative Modeling of Membrane-associated Protein Assemblies Jorge Roel-Touris, Brian Jiménez-García & Alexandre M.J.J. Bonvin Nat Commun 11, 6210 (2020); doi: https://doi.org/10.1038/s41467-020-20076-5 |
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Neurosnap Inc. (2022). Neurosnap: An online platform for computational biology and chemistry. Available at: https://neurosnap.ai/ |
Job Note
Provide a name or description for your job to help you organize and track its results. This input is solely for organizational purposes and does not impact the outcome of the job.
Inputs & Configuration
Ready to submit your job?
Review your configuration, then confirm the estimated credit cost before you run the job.
Note that credit estimates are not guaranteed and runtime can vary depending on inputs and settings.
Estimated Credits: calculating...
To submit a job please login or register an account.