Use DockQ

Official Neurosnap webserver for accessing DockQ online.

Overview

Assess the quality of protein-protein docking models using the native and predicted structure through a combination of Fnat, LRMS, and iRMS.

Neurosnap Overview

The DockQ online webserver allows anybody with a Neurosnap account to run and access DockQ, no downloads required. Information submitted through this webserver is kept confidential and never sold to third parties as detailed by our strong terms of service and privacy policy.

View Paper

Features

  • Quantitavely assess predicted protein-protein docking models.
  • Combine state-of-the-art metrics to validate docked models in Fnat, LRMS, and iRMS
  • Only requires the predicted model and the native structure.

Statistics

Neurosnap periodically calculates runtime statistics based on job execution data. These estimates provide a general guideline for how long your job may take, but actual runtimes can vary significantly depending on factors like input size or settings used.

Statistic Value
Credit Usage Rate loading...
Estimated Total Cost loading...
Runtime Mean loading...
Runtime Median loading...
Runtime Standard Deviation loading...
Runtime 90th Percentile loading...
Runtime Longest loading...

API Request

Access DockQ using the Neurosnap API by sending a request using any programming language with HTTP support. To safely generate an API key, visit the API tab of your overview page.

Job Note

Provide a name or description for your job to help you organize and track its results. This input is solely for organizational purposes and does not impact the outcome of the job.

Configuration & Options

Service Inputs

The PDB file containing the native structure used to produce the docked model. This must have two protein chains at a minimum

The PDB file containing the computationally produced, docked model This must have two protein chains at a minimum.

Advanced Settings

Check this option to use only the Alpha-Carbons atoms instead of the protein backbone for RMSD measurements.

The maximum number of allowed residue mismatches between structures. If there is a difference of residues greater than this value than the job will fail.

Ready to submit your job?

Once you're done just hit the submit button below and let us do the rest.

To submit a job please login or register an account.