Use ClusterProt

Official Neurosnap webserver for accessing ClusterProt online.

Protein Clustering Protein Conformations Protein Annotation

Overview

Algorithm for clustering proteins of the same length using their structural information. Can be useful for identifying alternative protein conformations structurally or for identifying impacts of same length mutants on structures.

Neurosnap Overview

The ClusterProt online webserver allows anybody with a Neurosnap account to run and access ClusterProt, no downloads required. Information submitted through this webserver is kept confidential and never sold to third parties as detailed by our strong terms of service and privacy policy.

View Paper

Features

  • Creates a 2D projection and cluster of a set of input proteins of same length.
  • Proteins within closer proximity will have more similar structures.
  • Can be used to identify protein conformations from a set of predicted structures.
  • Produces an animation of each protein sorted by similarity.

Statistics

Neurosnap periodically calculates runtime statistics based on job execution data. These estimates provide a general guideline for how long your job may take, but actual runtimes can vary significantly depending on factors like input size or settings used.

Statistic Value
Credit Usage Rate loading...
Estimated Total Cost loading...
Runtime Mean loading...
Runtime Median loading...
Runtime Standard Deviation loading...
Runtime 90th Percentile loading...
Runtime Longest loading...

API Request

Access ClusterProt using the Neurosnap API by sending a request using any programming language with HTTP support. To safely generate an API key, visit the API tab of your overview page.

Video Tutorial

The following youtube video describes how to use ClusterProt using Neurosnap's online webserver. If you have any questions or want to suggest improvements for future tutorials please contact us here.

Job Note

Provide a name or description for your job to help you organize and track its results. This input is solely for organizational purposes and does not impact the outcome of the job.

Configuration & Options

Service Inputs

Provide all the proteins you want to cluster in this input. Protein structures must all be valid PDB files of the same length.

Advanced Settings

A 1D projection is used to produce the animation iterating over all the proteins. We recommend using UMAP for this but PCA will work as well.

Ready to submit your job?

Once you're done just hit the submit button below and let us do the rest.

To submit a job please login or register an account.