Use Transcript Assembly

RNASeq / Transcriptome Analysis

Overview

Takes in raw transcriptome data from an RNAseq experiment in and automatically assembles and quantifies transcripts. No reference genome required!

Features

  • Automatically assembles raw reads into valid transcripts without requiring a reference genome.
  • Automatically quantifies transcripts.
  • Automatically removes adapters and other unnecessary sequences.
  • Automatically performs quality control on read data.
  • Supports compressed fastq files.
View Paper

Configuration & Options

Primary Input

An interleaved fastq file containing the raw reads data from your RNAseq experiment. Accepts fastq files as well as compressed fastq files in the fastq.gz format. For larger files it is seriously recommended to upload your file in the compressed fastq.gz format. Feel free to contact our support team for additional help.

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