Use RoseTTAFold All-Atom

Official Neurosnap webserver for accessing RoseTTAFold All-Atom online.

Protein Folding

Overview

RoseTTAFold All-Atom is a highly accurate neural network made by The Baker Lab and is substantially faster than competing models. RoseTTAFold All-Atom predicts a variety of protein complexes with high accuracy.

Neurosnap Overview

The RoseTTAFold All-Atom online webserver allows anybody with a Neurosnap account to run and access RoseTTAFold All-Atom, no downloads required. Information submitted through this webserver is kept confidential and never sold to third parties as detailed by our strong terms of service and privacy policy.

View Paper

Features

  • Predict DNA - protein complexes, protein - protein complexes, and protein - small molecule complexes.
  • Quick performance relative to competing models.
  • Includes readouts and figures of pLLDT, PAE, and easy to digest structure confidence metrics.

Statistics

Neurosnap periodically calculates runtime statistics based on job execution data. These estimates provide a general guideline for how long your job may take, but actual runtimes can vary significantly depending on factors like input size or settings used.

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API Request

Access RoseTTAFold All-Atom using the Neurosnap API by sending a request using any programming language with HTTP support. To safely generate an API key, visit the API tab of your overview page.

Video Tutorial

The following youtube video describes how to use RoseTTAFold All-Atom using Neurosnap's online webserver. If you have any questions or want to suggest improvements for future tutorials please contact us here.

Job Note

Provide a name or description for your job to help you organize and track its results. This input is solely for organizational purposes and does not impact the outcome of the job.

Configuration & Options

Service Inputs

The amino acid, DNA, and RNA sequences corresponding to the molecules you want to predict. For complex prediction simply provide multiple sequences in this input and they will all be folded at the same time together. For DNA and RNA sequences enter them in the 5′-->3′ direction. For DNA do not include the complementary sequence as they are automatically generated.

Input small molecules to include in prediction.

Allowed Types: a3m
Optionally provide a custom MSA in a3m format for RoseTTAFold All-Atom to use during the prediction. Warning: We query a 3rd party service to perform sequence searches, if you do not wish to share your sequence than you must upload an MSA here.

Hallucination Warnings

RoseTTAFold All-Atom has shown to occasionally generate structures with disconnected DNA bases and residues. While this is uncommon, be aware that it is likely not an error with your input, but rather RoseTTAFold All-Atom itself.

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