Use RoseTTAFold All-Atom

Official Neurosnap webserver for accessing RoseTTAFold All-Atom online.

Protein Folding

Overview

RoseTTAFold All-Atom is a highly accurate neural network made by The Baker Lab and is substantially faster than competing models. RoseTTAFold All-Atom predicts a variety of protein complexes with high accuracy.

Neurosnap Overview

The RoseTTAFold All-Atom online webserver allows anybody with a Neurosnap account to run and access RoseTTAFold All-Atom, no downloads required. Information submitted through this webserver is kept confidential and never sold to third parties as detailed by our strong terms of service and privacy policy.

View Paper

Features

  • Predict DNA - protein complexes, protein - protein complexes, and protein - small molecule complexes.
  • Quick performance relative to competing models.
  • Includes readouts and figures of pLLDT, PAE, and easy to digest structure confidence metrics.

Configuration & Options

Model Inputs

Amino acid sequences of the chains you want to predict in FASTA format. Note that each sequence must have a unique alphanumeric name. Warning: We query a 3rd party service to perform sequence searches, if you do not wish to share your sequence please upload a Custom MSA instead.

Nucleotide sequence of the DNA / RNA ligand you want to predict in FASTA format. Do not include the complementary sequence, they are automatically generated. If you are not predicting a nucleotide - protein complex you must leave this blank.

Allowed Types: sdf or zip
Input small molecules in the SDF format. To use multiple small molecules, put them all a zip file and upload the zip file. Small molecules can include metal ions, ligands, etc, but not nucleotides.

Allowed Types: a3m
Optionally provide a custom MSA in a3m format for RoseTTAFold All-Atom to use during the prediction. Warning: We query a 3rd party service to perform sequence searches, if you do not wish to share your sequence than you must upload an MSA here.

Hallucination Warnings

RoseTTAFold All-Atom has shown to occasionally generate structures with disconnected DNA bases and residues. While this is uncommon, be aware that it is likely not an error with your input, but rather RoseTTAFold All-Atom itself.

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