Use PocketFlow

Official Neurosnap webserver for accessing PocketFlow online.

Overview

PocketFlow generates ligands for target protein binding pockets. PocketFlow considers chemical knowledge from the CrossedDock and ZINC 3D datasets during the molecular generation process.

Neurosnap Overview

The PocketFlow online webserver allows anybody with a Neurosnap account to run and access PocketFlow, no downloads required. Information submitted through this webserver is kept confidential and never sold to third parties as detailed by our strong terms of service and privacy policy.

View Paper

Features

  • PocketFlow can generate hundreds of small molecules in minutes.
  • Requires only a target protein binding pocket in PDB file format.
  • Returns ligands in SMI and SDF file format along with relevant metrics and graphs.

Statistics

Neurosnap periodically calculates runtime statistics based on job execution data. These estimates provide a general guideline for how long your job may take, but actual runtimes can vary significantly depending on factors like input size or settings used.

Statistic Value
Credit Usage Rate loading...
Estimated Total Cost loading...
Runtime Mean loading...
Runtime Median loading...
Runtime Standard Deviation loading...
Runtime 90th Percentile loading...
Runtime Longest loading...

API Request

Access PocketFlow using the Neurosnap API by sending a request using any programming language with HTTP support. To safely generate an API key, visit the API tab of your overview page.

Job Note

Provide a name or description for your job to help you organize and track its results. This input is solely for organizational purposes and does not impact the outcome of the job.

Configuration & Options

Service Inputs

A PDB file containing the protein binding pocket to generate ligands for.

The desired number of ligands to generate for your input binding pocket. The minimum is 1 and the maximum is 1000.

The maximum number of atoms per ligand during the generation process. The minimum is 5 and the maximum is 100.

The following options are the available model weights to use for ligand generation.

Ready to submit your job?

Once you're done just hit the submit button below and let us do the rest.

To submit a job please login or register an account.