Use DEAnalysis

Allowed Types: xlsx
The raw reads of transcripts from your differential expression experiment. This should be a count matrix of shape 'number of samples' x 'number of genes', containing read counts as non-negative integers. This spreadsheet must have sample names such as 'SRR975562' as column headers and rows indexed by gene names as Ensembl IDs.

Allowed Types: xlsx
The metadata of your differential expression experiment. This serves as a map between samples and their treatments. Metadata of shape 'number of samples' x 'number of variables', containing sample annotations that will be used. This spreadsheet must have the sample names in one column and the 'Condition' in another.

The name of the column that contains your experimental conditions. There should be at least two different conditions in this column.

The cutoff for the absolute value of Log2(Fold Change) to determine if a gene is differentially expressing. A common value for this is 1, meaning that the gene is 2-fold up or down regulated.

The cutoff for Adjusted P-Value to determine if a gene is differentially expressing. A common value for this is 0.05.