Use ColabDock

Official Neurosnap webserver for accessing ColabDock online.

Molecular Docking Drug Design

Overview

ColabDock is a docking framework developed based on ColabDesign. It is able to incorporate experimental restraints to generate accurate protein complex structure.

Neurosnap Overview

The ColabDock online webserver allows anybody with a Neurosnap account to run and access ColabDock, no downloads required. Information submitted through this webserver is kept confidential and never sold to third parties as detailed by our strong terms of service and privacy policy.

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Features

  • Dock proteins on proteins using a specialized version of AlphaFold2.
  • Predict protein-peptide interactions as well.
  • Supports fixed chains and various experimental restraints that can be used to guide docking.

Statistics

Neurosnap periodically calculates runtime statistics based on job execution data. These estimates provide a general guideline for how long your job may take, but actual runtimes can vary significantly depending on factors like input size or settings used.

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API Request

Access ColabDock using the Neurosnap API by sending a request using any programming language with HTTP support. To safely generate an API key, visit the API tab of your overview page.

Job Note

Provide a name or description for your job to help you organize and track its results. This input is solely for organizational purposes and does not impact the outcome of the job.

Configuration & Options

Service Inputs

The structure of proteins you want to dock. Beware of protein length, ~700 residues or longer will overload GPU.

Core Settings

Determines the order that the chain sequences are concatenated to form the complex sequence. You can leave this blank to use all available chains in a PDB file automatically.

Fixes the positions of protein chains relative to each other. To fix the relative positions of chains A and B input AB.

Ready to submit your job?

Once you're done just hit the submit button below and let us do the rest.

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