Use AlphaFold2
Overview
Highly accurate protein structure prediction model that takes an amino acid sequence, MSA, and a template structure as inputs. Both the MSA and template are optional and can be automatically generated. This implementation uses the ColabFold model.
Features
- Utilizes the faster & more accurate ColabFold implementation of AlphaFold2.
- Includes 3D interactive visualizations of all your folded protein.
- Includes interactive visualizations for pLDDT and PAE metrics as well as downloads.
- Everything from the protein structure, to the MSA used are available for download.
- Supports monomers and complexes.
- Supports the faster mmseqs2 MSA algorithm.
- Supports different MSA databases, single_sequence, and custom MSA.
- Supports template detection, no templates, as well as custom templates.
- Supports Amber structure relaxation / refinement.
- Supports different pairing modes (unpaired+paired, paired, unpaired).
- Supports different model types (ptm, multimer-v1, multimer-v2, multimer-v3).
- Supports different recycling numbers.