Data & Visualizations

Various data visualizations for this jobs output data.

Volcano plot of Transcripts and Heatmap of Differentially Expressing Genes

The Volcano Plot is -Log10(Padj) vs. Log2(Fold Change). A positive Log2(Fold Change) indicates an up-regulation of a gene in condition A vs. condition B. A Log2(Fold Change) of 1 means that the gene expressed two-fold higher in condition A vs. condition B. -Log10(Padj) is a scaling metric that allows higher interpretability for the significance of results. A smaller adjusted P-value indicates higher significance. The heatmap contains centered and normalized raw read count data of Differentially Expressing Genes (DEGs) and allows for a quick overview of expression patterns by condition and gene.

Gene Ontology Enrichment

NOTE: Initial gene ontology scan of DEGs. Not every gene has a result from our standard gene ontology process, so we provide a secondary scan in addition to this one below of all genes that did not get annotations in the first pass.

Acronym's in Category: MF - Molecular Function

Acronym's in Evidence: EXP - Experimental Evidence, IDA - Inferred from Direct Assay, IPI - Inferred from Physical Interaction, IMP - Inferred from Mutant Phenotype, IGI - Inferred from Genetic Interaction, IEP - Inferred from Expression Pattern, ISS - Inferred from Sequence or Structural Similarity, ISO - Inferred from Sequence Orthology, ISA - Inferred from Sequence Alignment, ISM - Inferred from Sequence Model, IGC - Inferred from Genomic Context, RCA - Inferred from Reviewed Computational Analysis, TAS - Traceable Author Statement, NAS - Non-traceable Author Statement, IC - Inferred by Curator, ND - No Biological Data Available

Secondary Gene Ontology Enrichment

NOTE: Secondary Gene Ontology Scan, some genes still may not have results and will require further investigation.

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