neurosnap.sequence package

Sequence analysis and utility modules.

Submodules

• neurosnap.sequence.align module
  • align_mafft()
  • alignment_coverage()
  • consensus_sequence()
  • pad_seqs()
  • read_msa()
  • run_mmseqs2()
  • run_mmseqs2_modes()
  • run_phmmer()
  • run_phmmer_mafft()
  • seqid()
  • write_msa()
• neurosnap.sequence.nucleotide module
  • get_reverse_complement()
  • split_interleaved_fastq()
• neurosnap.sequence.protein module
  • getAA()
  • isoelectric_point()
  • molecular_weight()
  • net_charge()
  • sanitize_aa_seq()